IL_8C8Z_016

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Z_016 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.1411

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8C8Z|1|A|C|672
8C8Z|1|A|C|673
8C8Z|1|A|G|674
*
8C8Z|1|A|C|806
8C8Z|1|A|U|807
8C8Z|1|A|G|808

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15