IL_8C8Z_024

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

8C8Z|1|A|A|910, 8C8Z|1|A|A|911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Z_024 not in the Motif Atlas

Homologous match to IL_4WF9_033

Geometric discrepancy: 0.365

The information below is about IL_4WF9_033

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8C8Z|1|A|G|864
8C8Z|1|A|C|865
8C8Z|1|A|A|866
8C8Z|1|A|C|867
8C8Z|1|A|U|868
*
8C8Z|1|A|A|909
8C8Z|1|A|A|910
8C8Z|1|A|A|911
8C8Z|1|A|C|912

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA