IL_8C8Z_040

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

8C8Z|1|A|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Z_040 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.2929

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8C8Z|1|A|C|1319
8C8Z|1|A|C|1320
8C8Z|1|A|A|1321
8C8Z|1|A|A|1322
8C8Z|1|A|C|1323
*
8C8Z|1|A|G|1331
8C8Z|1|A|G|1332
8C8Z|1|A|G|1333

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22