IL_8C8Z_043

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Z_043 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.2811

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8C8Z|1|A|C|1357
8C8Z|1|A|G|1358
8C8Z|1|A|A|1359
8C8Z|1|A|G|1360
8C8Z|1|A|G|1361
*
8C8Z|1|A|C|1370
8C8Z|1|A|G|1371
8C8Z|1|A|U|1372
8C8Z|1|A|A|1373
8C8Z|1|A|G|1374

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain X

50S ribosomal protein L28