IL_8C8Z_089

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GGGAAACG*CGGAAGAUGUAACGGGGC

Length

26 nucleotides

Bulged bases

8C8Z|1|A|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C8Z|1|A|G|1024
8C8Z|1|A|G|1025
8C8Z|1|A|G|1026
8C8Z|1|A|A|1027
8C8Z|1|A|A|1028
8C8Z|1|A|A|1029
8C8Z|1|A|C|1030
8C8Z|1|A|G|1031
*
8C8Z|1|A|C|1123
8C8Z|1|A|G|1124
8C8Z|1|A|G|1125
8C8Z|1|A|A|1126
8C8Z|1|A|A|1127
8C8Z|1|A|G|1128
8C8Z|1|A|A|1129
8C8Z|1|A|U|1130
8C8Z|1|A|G|1131
8C8Z|1|A|U|1132
8C8Z|1|A|A|1133
8C8Z|1|A|A|1134
8C8Z|1|A|C|1135
8C8Z|1|A|G|1136
8C8Z|1|A|G|1137
8C8Z|1|A|G|1138
8C8Z|1|A|G|1139
8C8Z|1|A|C|1140

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13