IL_8C8Z_090

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Z_090 not in the Motif Atlas

Homologous match to IL_7A0S_048

Geometric discrepancy: 0.1794

The information below is about IL_7A0S_048

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8C8Z|1|A|C|1351
8C8Z|1|A|U|1352
8C8Z|1|A|A|1353
8C8Z|1|A|A|1354
8C8Z|1|A|G|1355
*
8C8Z|1|A|C|1376
8C8Z|1|A|G|1377
8C8Z|1|A|A|1378
8C8Z|1|A|U|1379
8C8Z|1|A|G|1380

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34