IL_8C8Z_091

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8C8Z|1|A|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Z_091 not in the Motif Atlas

Homologous match to IL_4WF9_082

Geometric discrepancy: 0.46

The information below is about IL_4WF9_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8C8Z|1|A|U|2081
8C8Z|1|A|A|2082
8C8Z|1|A|G|2083
*
8C8Z|1|A|U|2236
8C8Z|1|A|G|2237
8C8Z|1|A|G|2238
8C8Z|1|A|G|2239

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28