IL_8C90_037

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C90_037 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.1296

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8C90|1|A|A|1262
8C90|1|A|U|1263
8C90|1|A|A|1264
8C90|1|A|A|1265
8C90|1|A|G|1266
8C90|1|A|U|1267
8C90|1|A|A|1268
8C90|1|A|A|1269
*
8C90|1|A|U|2011
8C90|1|A|G|2012
8C90|1|A|A|2013
8C90|1|A|A|2014
8C90|1|A|A|2015
8C90|1|A|U|2016
8C90|1|A|U|2017

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain S

50S ribosomal protein L22