IL_8C90_049

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UAAGC*GUGAUG

Length

11 nucleotides

Bulged bases

8C90|1|A|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C90_049 not in the Motif Atlas

Geometric match to IL_3BNN_006

Geometric discrepancy: 0.3503

The information below is about IL_3BNN_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8C90|1|A|U|1468
8C90|1|A|A|1469
8C90|1|A|A|1470
8C90|1|A|G|1471
8C90|1|A|C|1472
*
8C90|1|A|G|1519
8C90|1|A|U|1520
8C90|1|A|G|1521
8C90|1|A|A|1522
8C90|1|A|U|1523
8C90|1|A|G|1524

Current chains

Chain A

23S rRNA

Nearby chains