IL_8C90_069

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

8C90|1|A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C90_069 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.2809

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8C90|1|A|G|2737
8C90|1|A|A|2738
8C90|1|A|U|2739
8C90|1|A|A|2740
8C90|1|A|A|2741
8C90|1|A|G|2742
*
8C90|1|A|C|2762
8C90|1|A|G|2763
8C90|1|A|A|2764
8C90|1|A|A|2765
8C90|1|A|A|2766
8C90|1|A|C|2767

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13