IL_8C98_006

3D structure

PDB id

8C98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.66 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C98_006 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.2028

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8C98|1|A|C|239
8C98|1|A|C|240
8C98|1|A|A|241
8C98|1|A|G|242
8C98|1|A|U|243
8C98|1|A|A|244
8C98|1|A|G|245
*
8C98|1|A|C|253
8C98|1|A|G|254
8C98|1|A|A|255
8C98|1|A|A|256
8C98|1|A|C|257
8C98|1|A|G|258

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15