IL_8C98_007

3D structure

PDB id

8C98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.66 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C98_007 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3952

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8C98|1|A|C|274
8C98|1|A|C|275
8C98|1|A|U|276
8C98|1|A|G|277
8C98|1|A|A|278
8C98|1|A|A|279
8C98|1|A|U|280
8C98|1|A|C|281
*
8C98|1|A|G|359
8C98|1|A|U|360
8C98|1|A|G|361
8C98|1|A|A|362
8C98|1|A|G|363

Current chains

Chain A

23S rRNA

Nearby chains