IL_8C98_025

3D structure

PDB id

8C98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.66 Å

Loop

Sequence

UCGAAA*UA

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C98_025 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2303

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8C98|1|A|U|1344
8C98|1|A|C|1345
8C98|1|A|G|1346
8C98|1|A|A|1383
8C98|1|A|A|1384
8C98|1|A|A|1385
*
8C98|1|A|U|1402
8C98|1|A|A|1403

Current chains

Chain A

23S rRNA

Nearby chains