IL_8CA7_014
3D structure
- PDB id
- 8CA7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Omadacycline and spectinomycin bound to the 30S ribosomal subunit head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.06 Å
Loop
- Sequence
- CAGC*GG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CA7_014 not in the Motif Atlas
- Homologous match to IL_5J7L_052
- Geometric discrepancy: 0.1751
- The information below is about IL_5J7L_052
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_15052.4
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 8
Unit IDs
8CA7|1|A|C|1129
8CA7|1|A|A|1130
8CA7|1|A|G|1131
8CA7|1|A|C|1132
*
8CA7|1|A|G|1142
8CA7|1|A|G|1143
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
Coloring options: