IL_8CAH_010

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAH_010 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.0955

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

8CAH|1|2|U|117
8CAH|1|2|U|118
8CAH|1|2|A|119
8CAH|1|2|U|120
8CAH|1|2|U|121
8CAH|1|2|U|122
*
8CAH|1|2|A|295
8CAH|1|2|U|296
8CAH|1|2|U|297
8CAH|1|2|C|298
8CAH|1|2|A|299

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-B

Chain V

40S ribosomal protein S8-A