IL_8CAH_014
3D structure
- PDB id
- 8CAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUA*UUUUC
- Length
- 8 nucleotides
- Bulged bases
- 8CAH|1|2|U|260, 8CAH|1|2|U|261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CAH_014 not in the Motif Atlas
- Homologous match to IL_4V88_397
- Geometric discrepancy: 0.2542
- The information below is about IL_4V88_397
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8CAH|1|2|G|204
8CAH|1|2|U|205
8CAH|1|2|A|206
*
8CAH|1|2|U|259
8CAH|1|2|U|260
8CAH|1|2|U|261
8CAH|1|2|U|262
8CAH|1|2|C|263
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- OTU domain-containing protein 2
- Chain S
- 40S ribosomal protein S4-B
- Chain T
- 40S ribosomal protein S6-B
- Chain V
- 40S ribosomal protein S8-A
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