IL_8CAH_015

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAH_015 not in the Motif Atlas

Geometric match to IL_4V88_398

Geometric discrepancy: 0.1147

The information below is about IL_4V88_398

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8CAH|1|2|A|206
8CAH|1|2|U|207
8CAH|1|2|U|208
*
8CAH|1|2|A|257
8CAH|1|2|C|258
8CAH|1|2|U|259

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

OTU domain-containing protein 2

Chain S

40S ribosomal protein S4-B

Chain V

40S ribosomal protein S8-A