IL_8CAH_019

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8CAH|1|2|U|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAH_019 not in the Motif Atlas

Homologous match to IL_4V88_401

Geometric discrepancy: 0.5608

The information below is about IL_4V88_401

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8CAH|1|2|C|275
8CAH|1|2|C|276
*
8CAH|1|2|G|279
8CAH|1|2|U|280
8CAH|1|2|G|281

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-B