IL_8CAH_054

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8CAH|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAH_054 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.16

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8CAH|1|2|U|893
8CAH|1|2|U|894
8CAH|1|2|G|895
8CAH|1|2|U|896
8CAH|1|2|C|897
8CAH|1|2|A|898
8CAH|1|2|G|899
*
8CAH|1|2|C|910
8CAH|1|2|U|911
8CAH|1|2|U|912
8CAH|1|2|G|913
8CAH|1|2|G|914
8CAH|1|2|A|915
8CAH|1|2|U|916
8CAH|1|2|U|917
8CAH|1|2|U|918
8CAH|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-A