IL_8CAH_067
3D structure
- PDB id
- 8CAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUC*GUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CAH_067 not in the Motif Atlas
- Geometric match to IL_3SZX_003
- Geometric discrepancy: 0.1115
- The information below is about IL_3SZX_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
8CAH|1|2|G|1213
8CAH|1|2|U|1214
8CAH|1|2|C|1215
*
8CAH|1|2|G|1448
8CAH|1|2|U|1449
8CAH|1|2|U|1450
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein S10-A
- Chain E
- RPS15 isoform 1
- Chain M
- RPS29A isoform 1
- Chain N
- 40S ribosomal protein S31
- Chain z
- Eukaryotic translation initiation factor 3 subunit J
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