IL_8CAH_068

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUAAGGA*UUU

Length

10 nucleotides

Bulged bases

8CAH|1|2|G|1228, 8CAH|1|2|G|1229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CAH|1|2|A|1224
8CAH|1|2|U|1225
8CAH|1|2|A|1226
8CAH|1|2|A|1227
8CAH|1|2|G|1228
8CAH|1|2|G|1229
8CAH|1|2|A|1230
*
8CAH|1|2|U|1257
8CAH|1|2|U|1258
8CAH|1|2|U|1259

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S10-A

Chain D

40S ribosomal protein S12

Chain N

40S ribosomal protein S31