IL_8CAH_084

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAH_084 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1334

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8CAH|1|2|G|1540
8CAH|1|2|G|1541
8CAH|1|2|G|1542
8CAH|1|2|A|1543
8CAH|1|2|U|1544
8CAH|1|2|A|1545
*
8CAH|1|2|U|1566
8CAH|1|2|U|1567
8CAH|1|2|C|1568
8CAH|1|2|A|1569
8CAH|1|2|A|1570
8CAH|1|2|C|1571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S18-A

Chain J

40S ribosomal protein S19-A

Chain L

40S ribosomal protein S25-A