3D structure

PDB id
8CAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Streptomycin and Hygromycin B bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.08 Å

Loop

Sequence
CCUAAC*GGG
Length
9 nucleotides
Bulged bases
8CAI|1|A|C|48, 8CAI|1|A|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CAI_003 not in the Motif Atlas
Homologous match to IL_5J7L_003
Geometric discrepancy: 0.0649
The information below is about IL_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_14177.2
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

8CAI|1|A|C|47
8CAI|1|A|C|48
8CAI|1|A|U|49
8CAI|1|A|A|50
8CAI|1|A|A|51
8CAI|1|A|C|52
*
8CAI|1|A|G|359
8CAI|1|A|G|360
8CAI|1|A|G|361

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
Small ribosomal subunit protein uS12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0469 s