3D structure

PDB id
8CAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Streptomycin and Hygromycin B bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.08 Å

Loop

Sequence
CGCAG*UCAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CAI_026 not in the Motif Atlas
Homologous match to IL_5J7L_027
Geometric discrepancy: 0.0504
The information below is about IL_5J7L_027
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

8CAI|1|A|C|580
8CAI|1|A|G|581
8CAI|1|A|C|582
8CAI|1|A|A|583
8CAI|1|A|G|584
*
8CAI|1|A|U|757
8CAI|1|A|C|758
8CAI|1|A|A|759
8CAI|1|A|G|760
8CAI|1|A|G|761

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
Small ribosomal subunit protein uS8
Chain L
Small ribosomal subunit protein uS12
Chain O
Small ribosomal subunit protein uS15
Chain Q
Small ribosomal subunit protein uS17

Coloring options:


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