IL_8CAS_014

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

8CAS|1|2|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAS_014 not in the Motif Atlas

Geometric match to IL_7RQB_022

Geometric discrepancy: 0.2743

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

8CAS|1|2|G|204
8CAS|1|2|U|205
8CAS|1|2|A|206
*
8CAS|1|2|U|259
8CAS|1|2|U|260
8CAS|1|2|U|261
8CAS|1|2|U|262
8CAS|1|2|C|263

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-B

Chain V

40S ribosomal protein S8-A

Chain x

OTU domain-containing protein 2