IL_8CAS_030

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAS_030 not in the Motif Atlas

Geometric match to IL_9PN5_227

Geometric discrepancy: 0.3593

The information below is about IL_9PN5_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55553.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8CAS|1|2|G|487
8CAS|1|2|G|488
8CAS|1|2|C|489
*
8CAS|1|2|G|498
8CAS|1|2|U|499
8CAS|1|2|C|500

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain g

40S ribosomal protein S30-A

Chain p

Eukaryotic translation initiation factor 3 subunit B