IL_8CAS_044

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CAS|1|2|A|817
8CAS|1|2|C|818
8CAS|1|2|G|819
8CAS|1|2|U|820
8CAS|1|2|U|821
8CAS|1|2|U|822
*
8CAS|1|2|A|850
8CAS|1|2|U|851
8CAS|1|2|C|852
8CAS|1|2|G|853
8CAS|1|2|U|854

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein S7-A

Chain x

OTU domain-containing protein 2