IL_8CAS_070
3D structure
- PDB id
- 8CAS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 8CAS|1|2|C|1274
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CAS_070 not in the Motif Atlas
- Geometric match to IL_5UNE_005
- Geometric discrepancy: 0.3719
- The information below is about IL_5UNE_005
- Detailed Annotation
- tSH-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_76776.1
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CAS|1|2|G|1271
8CAS|1|2|U|1272
8CAS|1|2|G|1273
8CAS|1|2|C|1274
8CAS|1|2|A|1275
8CAS|1|2|U|1276
*
8CAS|1|2|A|1436
8CAS|1|2|U|1437
8CAS|1|2|G|1438
8CAS|1|2|C|1439
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- Eukaryotic translation initiation factor 4C
- Chain B
- 40S ribosomal protein S3
- Chain D
- 40S ribosomal protein S10-A
- Chain L
- 40S ribosomal protein S20
- Chain N
- RPS29A isoform 1
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