IL_8CAS_085
3D structure
- PDB id
- 8CAS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CAS_085 not in the Motif Atlas
- Geometric match to IL_1UN6_005
- Geometric discrepancy: 0.1612
- The information below is about IL_1UN6_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
8CAS|1|2|G|1642
8CAS|1|2|U|1643
8CAS|1|2|C|1644
*
8CAS|1|2|G|1757
8CAS|1|2|U|1758
8CAS|1|2|C|1759
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA
- Chain A
- Eukaryotic translation initiation factor 4C
- Chain m
- TIF5 isoform 1
- Chain n
- 60S ribosomal protein L41-A
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