IL_8CBJ_010
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUAUUU*AUUCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_010 not in the Motif Atlas
- Geometric match to IL_4V88_393
- Geometric discrepancy: 0.1374
- The information below is about IL_4V88_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
8CBJ|1|2|U|117
8CBJ|1|2|U|118
8CBJ|1|2|A|119
8CBJ|1|2|U|120
8CBJ|1|2|U|121
8CBJ|1|2|U|122
*
8CBJ|1|2|A|295
8CBJ|1|2|U|296
8CBJ|1|2|U|297
8CBJ|1|2|C|298
8CBJ|1|2|A|299
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4-B
- Chain I
- 40S ribosomal protein S8-A
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