IL_8CBJ_013
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAC*GAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_013 not in the Motif Atlas
- Geometric match to IL_4WF9_087
- Geometric discrepancy: 0.1605
- The information below is about IL_4WF9_087
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
8CBJ|1|2|C|186
8CBJ|1|2|G|187
8CBJ|1|2|A|188
8CBJ|1|2|C|189
*
8CBJ|1|2|G|196
8CBJ|1|2|A|197
8CBJ|1|2|A|198
8CBJ|1|2|G|199
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S8-A
Coloring options: