IL_8CBJ_016

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAU*AU

Length

5 nucleotides

Bulged bases

8CBJ|1|2|A|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_016 not in the Motif Atlas

Geometric match to IL_4V88_399

Geometric discrepancy: 0.1808

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8CBJ|1|2|A|265
8CBJ|1|2|A|266
8CBJ|1|2|U|267
*
8CBJ|1|2|A|288
8CBJ|1|2|U|289

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-B

Chain G

40S ribosomal protein S6-B