IL_8CBJ_020

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8CBJ|1|2|U|320, 8CBJ|1|2|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_020 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2078

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8CBJ|1|2|U|318
8CBJ|1|2|U|319
8CBJ|1|2|U|320
8CBJ|1|2|C|321
8CBJ|1|2|G|322
8CBJ|1|2|A|323
*
8CBJ|1|2|U|345
8CBJ|1|2|G|346

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8-A

Chain L

40S ribosomal protein S11-A