IL_8CBJ_030

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

8CBJ|1|2|A|541, 8CBJ|1|2|A|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CBJ|1|2|G|514
8CBJ|1|2|A|515
8CBJ|1|2|G|516
*
8CBJ|1|2|C|536
8CBJ|1|2|G|537
8CBJ|1|2|A|538
8CBJ|1|2|G|539
8CBJ|1|2|G|540
8CBJ|1|2|A|541
8CBJ|1|2|A|542
8CBJ|1|2|C|543

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain e

40S ribosomal protein S30-A

Chain k

TSR1 isoform 1