IL_8CBJ_033

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CGCGGUAAUUCCAGCU

Length

18 nucleotides

Bulged bases

8CBJ|1|2|U|581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CBJ|1|2|A|550
8CBJ|1|2|G|551
*
8CBJ|1|2|C|573
8CBJ|1|2|G|574
8CBJ|1|2|C|575
8CBJ|1|2|G|576
8CBJ|1|2|G|577
8CBJ|1|2|U|578
8CBJ|1|2|A|579
8CBJ|1|2|A|580
8CBJ|1|2|U|581
8CBJ|1|2|U|582
8CBJ|1|2|C|583
8CBJ|1|2|C|584
8CBJ|1|2|A|585
8CBJ|1|2|G|586
8CBJ|1|2|C|587
8CBJ|1|2|U|588

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S30-A

Chain k

TSR1 isoform 1

Chain l

non-specific serine/threonine protein kinase