IL_8CBJ_051

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

8CBJ|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_051 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.1215

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8CBJ|1|2|G|867
8CBJ|1|2|G|868
8CBJ|1|2|A|869
8CBJ|1|2|C|870
*
8CBJ|1|2|G|957
8CBJ|1|2|U|958
8CBJ|1|2|U|959
8CBJ|1|2|U|960
8CBJ|1|2|U|961

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S22-A

Chain b

40S ribosomal protein S27-A