IL_8CBJ_066

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_066 not in the Motif Atlas

Geometric match to IL_1ZZ5_002

Geometric discrepancy: 0.1802

The information below is about IL_1ZZ5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8CBJ|1|2|G|1213
8CBJ|1|2|U|1214
8CBJ|1|2|C|1215
*
8CBJ|1|2|G|1448
8CBJ|1|2|U|1449
8CBJ|1|2|U|1450

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain P

RPS15 isoform 1

Chain i

ENP1 isoform 1

Chain k

TSR1 isoform 1