IL_8CBJ_072

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*CUG

Length

5 nucleotides

Bulged bases

8CBJ|1|2|U|1432

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_072 not in the Motif Atlas

Geometric match to IL_4V88_407

Geometric discrepancy: 0.279

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8CBJ|1|2|U|1276
8CBJ|1|2|G|1277
*
8CBJ|1|2|C|1431
8CBJ|1|2|U|1432
8CBJ|1|2|G|1433

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain d

RPS29A isoform 1

Chain i

ENP1 isoform 1