IL_8CBJ_073
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_073 not in the Motif Atlas
- Geometric match to IL_7A0S_031
- Geometric discrepancy: 0.233
- The information below is about IL_7A0S_031
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 215
Unit IDs
8CBJ|1|2|G|1277
8CBJ|1|2|G|1278
8CBJ|1|2|C|1279
*
8CBJ|1|2|G|1429
8CBJ|1|2|U|1430
8CBJ|1|2|C|1431
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain U
- 40S ribosomal protein S20
- Chain d
- RPS29A isoform 1
- Chain i
- ENP1 isoform 1
- Chain k
- TSR1 isoform 1
Coloring options: