IL_8CBJ_074

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8CBJ|1|2|A|1427

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_074 not in the Motif Atlas

Geometric match to IL_4V9F_064

Geometric discrepancy: 0.3876

The information below is about IL_4V9F_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8CBJ|1|2|C|1280
8CBJ|1|2|G|1281
*
8CBJ|1|2|C|1426
8CBJ|1|2|A|1427
8CBJ|1|2|G|1428

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein S20

Chain d

RPS29A isoform 1

Chain k

TSR1 isoform 1