IL_8CBJ_084

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAUAG*CUUCAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CBJ|1|2|G|1540
8CBJ|1|2|G|1541
8CBJ|1|2|G|1542
8CBJ|1|2|A|1543
8CBJ|1|2|U|1544
8CBJ|1|2|A|1545
8CBJ|1|2|G|1546
*
8CBJ|1|2|C|1565
8CBJ|1|2|U|1566
8CBJ|1|2|U|1567
8CBJ|1|2|C|1568
8CBJ|1|2|A|1569
8CBJ|1|2|A|1570
8CBJ|1|2|C|1571

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain S

40S ribosomal protein S18-A

Chain T

40S ribosomal protein S19-A

Chain l

non-specific serine/threonine protein kinase