IL_8CBJ_089

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUU*AGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CBJ|1|2|C|1653
8CBJ|1|2|G|1654
8CBJ|1|2|A|1655
8CBJ|1|2|U|1656
8CBJ|1|2|U|1657
*
8CBJ|1|2|A|1744
8CBJ|1|2|G|1745
8CBJ|1|2|A|1746
8CBJ|1|2|G|1747

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain k

TSR1 isoform 1