IL_8CBJ_095

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_095 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1442

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8CBJ|1|2|U|1688
8CBJ|1|2|A|1689
8CBJ|1|2|G|1690
*
8CBJ|1|2|C|1711
8CBJ|1|2|A|1712
8CBJ|1|2|G|1713

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain K

OTU domain-containing protein 2