IL_8CBJ_101

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACCAC*GUCCCU

Length

11 nucleotides

Bulged bases

8CBJ|1|2|C|1158, 8CBJ|1|2|C|1159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CBJ|1|2|A|1157
8CBJ|1|2|C|1158
8CBJ|1|2|C|1159
8CBJ|1|2|A|1160
8CBJ|1|2|C|1161
*
8CBJ|1|2|G|1616
8CBJ|1|2|U|1617
8CBJ|1|2|C|1618
8CBJ|1|2|C|1619
8CBJ|1|2|C|1620
8CBJ|1|2|U|1621

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain U

40S ribosomal protein S20

Chain c

40S ribosomal protein S28-A

Chain h

Pre-rRNA-processing protein PNO1

Chain l

non-specific serine/threonine protein kinase