IL_8CBJ_105

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCCCG*CGUAACAAG

Length

15 nucleotides

Bulged bases

8CBJ|1|2|U|1761

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CBJ|1|2|C|1637
8CBJ|1|2|G|1638
8CBJ|1|2|C|1639
8CBJ|1|2|C|1640
8CBJ|1|2|C|1641
8CBJ|1|2|G|1642
*
8CBJ|1|2|C|1759
8CBJ|1|2|G|1760
8CBJ|1|2|U|1761
8CBJ|1|2|A|1762
8CBJ|1|2|A|1763
8CBJ|1|2|C|1764
8CBJ|1|2|A|1765
8CBJ|1|2|A|1766
8CBJ|1|2|G|1767

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain l

non-specific serine/threonine protein kinase

Chain y

rRNA adenine N(6)-methyltransferase