IL_8CCS_018

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

CAGAGG*CAUAAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CCS|1|AA|C|435
8CCS|1|AA|A|436
8CCS|1|AA|G|437
8CCS|1|AA|A|438
8CCS|1|AA|G|494
8CCS|1|AA|G|495
*
8CCS|1|AA|C|618
8CCS|1|AA|A|619
8CCS|1|AA|U|620
8CCS|1|AA|A|621
8CCS|1|AA|A|622
8CCS|1|AA|U|623
8CCS|1|AA|G|624

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain II

60S ribosomal protein L6-A

Chain Q

60S ribosomal protein L32

Chain R

60S ribosomal protein L33-A