IL_8CCS_142

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8CCS|1|AA|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CCS_142 not in the Motif Atlas

Geometric match to IL_2R8S_004

Geometric discrepancy: 0.2871

The information below is about IL_2R8S_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8CCS|1|AA|G|3340
8CCS|1|AA|U|3341
8CCS|1|AA|A|3342
*
8CCS|1|AA|U|3363
8CCS|1|AA|C|3364

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L24-A