IL_8CCS_184

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

G(OMG)UGCCAG*CGG(OMU)AAUUCC

Length

18 nucleotides

Bulged bases

8CCS|1|c|A|579, 8CCS|1|c|U|581, 8CCS|1|c|U|582

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CCS|1|c|G|561
8CCS|1|c|OMG|562
8CCS|1|c|U|563
8CCS|1|c|G|564
8CCS|1|c|C|565
8CCS|1|c|C|566
8CCS|1|c|A|567
8CCS|1|c|G|568
*
8CCS|1|c|C|575
8CCS|1|c|G|576
8CCS|1|c|G|577
8CCS|1|c|OMU|578
8CCS|1|c|A|579
8CCS|1|c|A|580
8CCS|1|c|U|581
8CCS|1|c|U|582
8CCS|1|c|C|583
8CCS|1|c|C|584

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain Bb

Transfer RNA; tRNA

Chain Dd

Messenger RNA

Chain g

RPS3 isoform 1

Chain z

40S ribosomal protein S23-A