IL_8CCS_247

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CCS_247 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0499

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

8CCS|1|AA|G|1898
8CCS|1|AA|G|1899
8CCS|1|AA|A|1900
8CCS|1|AA|A|1901
8CCS|1|AA|G|1902
8CCS|1|AA|U|1903
8CCS|1|AA|C|1904
8CCS|1|AA|G|1905
8CCS|1|AA|G|1906
*
8CCS|1|AA|C|2333
8CCS|1|AA|U|2334
8CCS|1|AA|G|2335
8CCS|1|AA|U|2336
8CCS|1|AA|OMC|2337

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain H

60S ribosomal protein L23-A

Chain I

60S ribosomal protein L24-A