IL_8CCS_248

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

C(5MC)A(A2M)(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

8CCS|1|AA|A2M|2281, 8CCS|1|AA|C|2287, 8CCS|1|AA|C|2306

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CCS_248 not in the Motif Atlas

Homologous match to IL_8P9A_318

Geometric discrepancy: 0.0738

The information below is about IL_8P9A_318

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

8CCS|1|AA|C|2277
8CCS|1|AA|5MC|2278
8CCS|1|AA|A|2279
8CCS|1|AA|A2M|2280
8CCS|1|AA|A2M|2281
8CCS|1|AA|U|2282
8CCS|1|AA|G|2283
8CCS|1|AA|C|2284
8CCS|1|AA|C|2285
8CCS|1|AA|U|2286
8CCS|1|AA|C|2287
8CCS|1|AA|OMG|2288
*
8CCS|1|AA|C|2304
8CCS|1|AA|G|2305
8CCS|1|AA|C|2306
8CCS|1|AA|G|2307

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain Z

60S ribosomal protein L41-A

Chain c

Small subunit ribosomal RNA; SSU rRNA